FastQCFastQC Report
Sat 11 May 2024
EGAF00005733741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences202904990
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGAGAA5437073126.79615272152745No Hit
TCGTCACG4397502221.672715885400354No Hit
GTAATTGC4341664021.39752206192662No Hit
AGTCGCGT3471068617.106866617720932No Hit
AGTCGCTT2497690012.30965290700835No Hit
AGTCGCTA2851190.14051847615970411No Hit
AGTCGCTG2546680.12551095958753897No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)