FastQCFastQC Report
Wed 8 May 2024
EGAF00005733742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences131957374
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTAACA3544510926.861029380593767No Hit
ATTCCGAT3496888726.500138597786886No Hit
GAAGGCTG3038326423.025059592349876No Hit
TGGATTGC3012673222.830654389954745No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)