FastQCFastQC Report
Fri 10 May 2024
EGAF00005733745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153868888
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTCAC4898382131.834779360984268No Hit
TGGTGTTT4090350226.583348025495578No Hit
GATCAGCA3624677623.556923346323266No Hit
ACAACAGG2605805416.935232546816092No Hit
TGGTGTTA2176570.1414561467422836No Hit
TGGGGTTT1562090.1015208480612403No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)