FastQCFastQC Report
Sat 11 May 2024
EGAF00005733748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173922203
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCAGC6688691038.45794777565001No Hit
GTCAGCTA3876889522.2909406224575No Hit
AATGTTAG3384560419.46019738491928No Hit
CGATAGCT3281398518.86704769948205No Hit
AATGTTAA2305760.13257421768053385No Hit
AATGGTAG2004980.11528027850475192No Hit
TCGCCAGA1899670.10922527240527193No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)