FastQCFastQC Report
Wed 1 May 2024
EGAF00005733749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences204467232
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGAGAA5476489726.78419249104913No Hit
TCGTCACG4435688121.69388247012607No Hit
GTAATTGC4390284521.47182439482528No Hit
AGTCGCGT3574322617.48115120959822No Hit
AGTCGCTT2427444511.872046568322498No Hit
AGTCGCTA2920450.14283217762736672No Hit
AGTCGCTG2338610.11437578418433327No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)