FastQCFastQC Report
Wed 8 May 2024
EGAF00005733760

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733760
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98914692
Total Bases791.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTGAT3477556035.157123069240306No Hit
ATATCCCG3167357232.02109955516011No Hit
GAGCAAGA2902729929.345791219771478No Hit
CGCAGTTC26769072.706278456591666No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)