FastQCFastQC Report
Wed 8 May 2024
EGAF00005733767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117911949
Total Bases943.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGATG3591820330.461885588881245No Hit
TGTAAGGT2729975123.1526585995114No Hit
GCATCTCC2679273022.722658922379445No Hit
AACGTCAA2669543422.640143112213334No Hit
GCATCTCA1865500.1582112767892591No Hit
AACGTAAA1544290.13096976286941028No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)