FastQCFastQC Report
Sat 11 May 2024
EGAF00005733768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11440566
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length93
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGAC176230.15403958160811276No Hit
GTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATG171230.14966916846596576No Hit
ATCCCACTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCT154770.13528176840201786No Hit
CTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCTGGGCCG146650.12818421745917116No Hit
TCCCACTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCTG126910.11092982637397485No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)