FastQCFastQC Report
Sat 11 May 2024
EGAF00005733769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11440566
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length93
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGAC162080.14167131241583675No Hit
GTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATG153270.13397064445937376No Hit
ATCCCACTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCT133750.11690855155243192No Hit
CTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCTGGGCCG126070.11019559696609416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)