FastQCFastQC Report
Wed 8 May 2024
EGAF00005733774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106687302
Total Bases853.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGTAC3004155528.158510372677714No Hit
TCCTTCTT2896119527.14586877452389No Hit
CTGACGCG2744208425.721977672656866No Hit
AAAGAAGA1941388018.19699217813194No Hit
TCCTTCTA1408670.13203726906506644No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)