FastQCFastQC Report
Wed 8 May 2024
EGAF00005733775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106576415
Total Bases852.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGTAC3000270128.151351309762106No Hit
TCCTTCTT2889828027.115079823242315No Hit
CTGACGCG2748023725.78453872744734No Hit
AAAGAAGA1934375718.150129181958317No Hit
TCCTTCTA1394160.13081318225988367No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)