FastQCFastQC Report
Wed 8 May 2024
EGAF00005733778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119216564
Total Bases953.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGATG3633189230.47554029488721No Hit
TGTAAGGT2761773423.166020788856155No Hit
AACGTCAA2702515022.66895563270889No Hit
GCATCTCC2700999022.656239278964623No Hit
GCATCTCA1876250.15738165377757407No Hit
AACGTAAA1584900.13294293568132026No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)