FastQCFastQC Report
Wed 8 May 2024
EGAF00005733779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90881458
Total Bases727 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATGTG2995338132.958737303708304No Hit
TTTCATGA2971560032.697098675507604No Hit
GAAGGAAC2689293629.59122420769262No Hit
ACGTCCCT33092003.6412267945789343No Hit
CGCATGTA1152070.1267662321174469No Hit
TTTCATAA1110870.12223285414281096No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)