FastQCFastQC Report
Wed 8 May 2024
EGAF00005733780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90925648
Total Bases727.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATGTG3006666133.067304617944544No Hit
TTTCATGA2977608832.747732520971425No Hit
GAAGGAAC2680767529.48307280691582No Hit
ACGTCCCT32803153.6076894387379017No Hit
CGCATGTA1154850.12701036785572317No Hit
TTTCATAA1108570.12192049486411138No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)