FastQCFastQC Report
Sat 11 May 2024
EGAF00005733781

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733781
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166820771
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCACGAA5080529230.455015700652766No Hit
CAATACCC4537450327.19955238667492No Hit
TGTCTATG3994640423.945701581729292No Hit
GTGGGTGT2886502617.30301678080603No Hit
CAATACCA4763890.2855693551494256No Hit
TGTCTATA3115150.18673633872606907No Hit
ACCACAAA1782560.10685479927436614No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)