FastQCFastQC Report
Sat 11 May 2024
EGAF00005733782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165559101
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCACGAA5044467130.469282990368495No Hit
CAATACCC4501121127.187397568678513No Hit
TGTCTATG3957533623.90405345339487No Hit
GTGGGTGT2868563817.326524381163438No Hit
CAATACCA4706590.28428458306257653No Hit
TGTCTATA3050050.18422726274649198No Hit
ACCACAAA1784470.10778447027203898No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)