FastQCFastQC Report
Sat 11 May 2024
EGAF00005733783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165849485
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCACGAA5053584730.470909813195984No Hit
CAATACCC4504711327.161442798571244No Hit
TGTCTATG3956738323.857404802915124No Hit
GTGGGTGT2880128217.365915848336822No Hit
CAATACCA4714830.28428366841175295No Hit
TGTCTATA3075680.18545007842502495No Hit
ACCACAAA1787390.10777181490795706No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)