FastQCFastQC Report
Sat 11 May 2024
EGAF00005733786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences167291660
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCACGAA5105379430.5178357367008No Hit
CAATACCC4548522627.18917727279411No Hit
TGTCTATG3995753123.88495098918858No Hit
GTGGGTGT2897563317.32042888450028No Hit
CAATACCA4758900.28446725915685217No Hit
TGTCTATA3135640.18743552428136587No Hit
ACCACAAA1773160.10599213373816722No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)