FastQCFastQC Report
Sun 5 May 2024
EGAF00005733809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005733809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163645346
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC5462004933.37708669087357No Hit
ACCGTATG3864694823.616282983079763No Hit
CTGACTGA3750098722.916011922514436No Hit
GATTAGAT3041767818.58756068748817No Hit
GAGTAGAT9640750.5891246060856505No Hit
TGACGCCA3114280.19030666475537897No Hit
ACCGTATA2298940.14048306635008123No Hit
GCTTAGAT1781940.10889035609970846No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)