FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005734804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005734804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40015672
Sequences flagged as poor quality0
Sequence length126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA531750.054.249241
TCAACGC559800.049.4414
CAACGCA567950.048.7949185
ATCAACG589600.047.0744063
ACGCAGA625650.044.304447
AACGCAG634550.043.7964976
CGCAGAG679150.040.8143588
TATCAAC694700.040.5139732
GGTATCA291200.037.4369351
AGTACGG657200.033.91165512-13
GCAGAGT857250.032.5168469
AGAGTAC699650.032.26519410-11
TACGGGG466950.030.35003914-15
GTACGGG674250.028.04439514-15
GAGTACG680500.027.87476712-13
TACGGGA220550.023.92646414-15
CAGAGTA802400.023.88265410-11
GTATATA233700.019.9479831
ACGGGGG214900.018.7481916-17
ATAATAC203550.017.5381013
Produced by FastQC (version 0.11.5)