FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005734812

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005734812
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83730960
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA919000.047.7142371
TCAACGC874250.047.3223654
CAACGCA903500.045.7778785
ATCAACG922050.044.9784433
AACGCAG976350.042.4443556
ACGCAGA1030850.040.055967
GGTATCA539100.037.9793241
TATCAAC1114700.037.8758622
CGCAGAG1163800.035.5447778
CGATACC540300.033.45697120
AGTACGG1037050.031.60445212-13
TACGGGG871600.029.36053314-15
AGAGTAC1143600.029.1763810-11
GTACGGG1068750.028.4401914-15
GCAGAGT1469300.028.4208479
GAGTACG1108900.027.42963412-13
CAGAGTA1311550.023.44965410-11
ACGGGGG479250.021.27179716-17
CGCCGTT115350.019.452547120
GTATATA384900.017.8459761
Produced by FastQC (version 0.11.5)