FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005734832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005734832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41062482
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA501000.051.2197721
TCAACGC485650.050.4172674
CAACGCA492250.049.7290955
ATCAACG509450.048.1679153
ACGCAGA543700.045.0011947
AACGCAG577100.042.427916
CGCAGAG600950.040.7848
TATCAAC645350.038.610262
AGTACGG554950.034.35404212-13
GGTATCA274450.032.1358831
GCAGAGT775500.031.7203669
AGAGTAC635100.030.44789310-11
TACGGGG393850.030.42257914-15
GTACGGG569950.028.50760514-15
GAGTACG573250.028.46892212-13
TACGGGA204400.023.67403614-15
CAGAGTA735600.022.49528910-11
GTATATA304800.021.1606791
ACGGGGG197650.017.39428516-17
GTATTAG205750.017.3213881
Produced by FastQC (version 0.11.5)