FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005739406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005739406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2204163
Sequences flagged as poor quality0
Sequence length150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGCG607.0934675E-660.08
CGCGTAC400.006219811354.02
TCGGCGG1400.001041039525.7142859
TATCGGC1701.0815241E-425.4117667
TTATCGG1751.3168326E-424.6857156
GCCGAAT2359.642835E-418.3829781
GCGGATG2700.0024428616.01
CCGAAAG4151.0823378E-515.6144581
GCATAAT19259.975158E-66.35844141
CAAGCGA13750.00202213536.28363669
AAGTCGG2800.00247815236.171428140-144
AAAGTGC54551.8189894E-125.1475714
Produced by FastQC (version 0.11.5)