FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005739412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005739412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2160899
Sequences flagged as poor quality0
Sequence length150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGCG700.001093515941.1428578
GCGAGCA2852.9738658E-722.7368411
TATCGGC1900.006130249718.9473697
CGGAGTA1950.00712183718.4615382
GCGCAGG3355.904836E-415.0447761
CCGAAGT3000.004925562514.4000012
CCCGAAG3250.00836912313.2923091
TCGTCGC1006.2736566E-512.9615-19
GCGAGAG3950.002049507812.7594941
CTCGTCG1059.9033656E-512.34285715-19
GCGAGGA4250.003548198411.8588251
CGTCGCT1009.0945855E-411.5215-19
CTGCGCC8950.001443568.0446932
GGATAAG13100.00117065726.59541941
ACCGTAA2450.0042166596.46530635-39
GCTAAGG13850.00219365356.23826741
CCAGTAA18350.00144336135.4931881
GAAGGTA18750.00189445485.3761
Produced by FastQC (version 0.11.5)