FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005739579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005739579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2462377
Sequences flagged as poor quality0
Sequence length150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGCG800.002107574836.08
TCGGCGG1700.00322076421.176479
CCGATCG901.3169065E-616.055-59
TCGTCGC1059.903587E-512.34285615-19
CTCGTCG1253.914033E-511.5215-19
CGATCGC1100.002015445110.47272760-64
CGTCGCT1254.9947697E-410.36815-19
CCTGTAT20353.465606E-66.36855031
AAGTCGG3653.1224838E-56.3123283140-144
CCCAACC21555.6370714E-55.67981431
GTCGCTG3600.00113267015.620-24
CCCCAAA41458.731149E-115.55850461
GACCTCC19806.365924E-45.45454552
CCCAAAG74100.05.4412951
GGCTAAT41104.0017767E-105.4306571
CCAAAGT68600.05.0379012
Produced by FastQC (version 0.11.5)