FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005740282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10645791
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG31000.016.3781811
CTACACT57250.014.6892514
GTGTAGG74000.013.8202771
GTATAGA61900.013.7095931
TACACTG84000.013.2910285
TATACTG77900.012.6566465
TATACGC8856.042683E-912.2884692
TAGGACT66150.012.2745444
TAGGGGT53450.012.2070864
CCTACAC69500.012.1003093
GTCATAC32450.012.0700321
GTATACG16900.012.0171271
TACACCG37650.011.9383385
TACCGTC11201.200533E-1011.6512277
TCTAGAC47950.011.641943
CTACCCT62600.011.5809144
GTGTAGA64600.011.5646921
GCTATAC33250.011.5559993
CTATACC38450.011.5013984
CTAGGAC42250.011.4966523
Produced by FastQC (version 0.11.5)