Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005740294 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7174230 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATAGG | 2115 | 0.0 | 17.489882 | 1 |
GTACGTC | 555 | 2.1846063E-9 | 16.982033 | 3 |
GTGTACG | 1090 | 0.0 | 16.63568 | 1 |
GTGTAGG | 5000 | 0.0 | 14.506313 | 1 |
TAGACCG | 500 | 5.88079E-5 | 13.049586 | 5 |
GTATAGA | 3910 | 0.0 | 12.985191 | 1 |
TATGCGT | 620 | 2.3807534E-6 | 12.8624935 | 4 |
GTGCTAG | 3445 | 0.0 | 12.632493 | 1 |
CTAGCAC | 2945 | 0.0 | 12.555217 | 3 |
GTATTAG | 2735 | 0.0 | 12.199094 | 1 |
CTACACT | 3770 | 0.0 | 12.115 | 4 |
TATACTG | 5065 | 0.0 | 12.023311 | 5 |
GTATATA | 6745 | 0.0 | 11.828721 | 1 |
ACATACG | 615 | 3.094833E-5 | 11.787668 | 145 |
TCTATAC | 3670 | 0.0 | 11.655349 | 3 |
CTAATAC | 3200 | 0.0 | 11.554724 | 3 |
GCGTAGA | 1005 | 3.1905074E-9 | 11.547314 | 1 |
TATACGC | 570 | 1.9961601E-4 | 11.448122 | 2 |
CTATACT | 3690 | 0.0 | 11.395302 | 4 |
GTCTAGA | 3130 | 0.0 | 11.354782 | 1 |