EGAF00005740373 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005740373
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10615823
Sequences flagged as poor quality	0
Sequence length	65
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	112023	1.0552455518521737	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGCCTAAATCTCGTATGCCGTCTTCTGCTTG	35902	0.338193279974619	TruSeq Adapter, Index 27 (97% over 39bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13686	0.12892076290269724	No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10902	0.10269575896282371	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	4385	50.38946	45
TATGCCG	4425	49.934906	48
CGTATGC	4580	48.24474	46
CTCGTAT	4665	47.11206	44
GTATGCC	5065	43.683506	47
GCCTAAA	5130	42.954052	36
TGCCTAA	5255	42.10071	35
ATGCCTA	5550	40.12906	34
CCTAAAT	5550	39.969604	37
GCCGTCT	5595	39.65056	51
ATGCCGT	5880	37.87959	49
CTAAATC	5915	37.00447	38
ACGTCTG	5985	36.916336	15
ATCTCGT	6080	36.389748	42
ACACGTC	6200	35.779076	13
TGCCGTC	6305	35.70006	50
CGTCTGA	6225	35.49305	16
CACGTCT	6480	34.369473	14
CACACGT	6855	32.446423	12
ACATGCC	7440	30.014278	32