EGAF00005740386 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005740386
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10130306
Sequences flagged as poor quality	0
Sequence length	65
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	63312	0.6249761853195747	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTGATCATCTCGTATGCCGTCTTCTGCTTG	47772	0.4715750935855244	TruSeq Adapter, Index 2 (97% over 38bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	5670	52.703266	48
TCGTATG	5755	51.976112	45
CGTATGC	5895	50.791775	46
CTCGTAT	6195	47.903564	44
GTATGCC	6300	47.43294	47
GCCGTCT	6650	45.24721	51
ACCGCTG	6700	44.557095	32
ATGCCGT	6785	44.30324	49
TCACCGC	6805	43.827316	30
CACCGCT	6905	43.362846	31
ATCTCGT	7000	42.436794	42
TGCCGTC	7210	41.93723	50
CATCTCG	7335	40.29756	41
ACGTCTG	7845	38.580486	15
GATCATC	7735	38.28993	38
CGCTGAT	7880	37.997143	34
CGTCTGA	7950	37.959618	16
ACACGTC	8070	37.57793	13
GCTGATC	7995	37.339905	35
TGATCAT	8310	36.101986	37