EGAF00005740418 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005740418
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11823172
Sequences flagged as poor quality	0
Sequence length	65
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	139645	1.1811128181168302	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAACGCTTAATCTCGTATGCCGTCTTCTGCTTG	39772	0.3363902681953709	TruSeq Adapter, Index 1 (97% over 36bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12662	0.1070947796411995	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	4950	48.212074	48
TCGTATG	5050	47.491035	45
CGTATGC	5155	46.580936	46
CTCGTAT	5210	45.749474	44
ACAACGC	5370	44.770893	32
ACGCTTA	5400	43.921253	35
CACAACG	5560	43.294197	31
CAACGCT	5540	43.184067	33
CGCTTAA	5515	42.951912	36
GTATGCC	5690	42.149338	47
TCTCGTA	6245	38.639664	43
GCCGTCT	6275	38.45493	51
GCTTAAT	6405	37.121742	37
ACGTCTG	6780	36.112774	15
ATCTCGT	6710	35.610245	42
ACACGTC	6935	35.135494	13
ATGCCGT	7065	33.987926	49
CGTCTGA	7175	33.754658	16
TCACAAC	7235	33.39389	30
TAATCTC	7180	33.238125	40