EGAF00005740429 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005740429
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10656718
Sequences flagged as poor quality	0
Sequence length	65
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	53377	0.5008765362844358	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAAGGTACAATCTCGTATGCCGTCTTCTGCTTG	38210	0.358553168057933	TruSeq Adapter, Index 7 (97% over 36bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	4930	51.639458	45
TATGCCG	4995	50.79149	48
CGTATGC	5090	50.01762	46
CTCGTAT	5160	49.10856	44
GTATGCC	5595	45.450348	47
GCCGTCT	6020	42.731285	51
TCTCGTA	6150	41.634975	43
TACAATC	6135	41.014362	38
GTACAAT	6195	40.90283	37
AAGGTAC	6235	40.687927	34
ATGCCGT	6570	38.795055	49
CAAGGTA	6715	37.86734	33
CGTCTGA	6740	37.770294	16
ACGTCTG	6815	37.354626	15
ACACGTC	6850	37.250416	13
ATCTCGT	6975	36.45631	42
TGCCGTC	7065	36.28537	50
CACGTCT	7085	35.972725	14
GTCACAA	7590	33.774082	29
CACACGT	7680	33.416702	12