FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005740435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13102165
Sequences flagged as poor quality0
Sequence length65
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1625021.2402683068027307No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACCTCCAAATCTCGTATGCCGTCTTCTGCTTG332730.25395039674740777TruSeq Adapter, Index 8 (97% over 37bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT160040.1221477519173358No Hit

[OK]Adapter Content

Adapter graph