EGAF00005740443 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005740443
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9253529
Sequences flagged as poor quality	0
Sequence length	65
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	477820	5.163651618749992	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGAGTCAAATCTCGTATGCCGTCTTCTGCTTG	115348	1.246529837427429	TruSeq Adapter, Index 5 (97% over 38bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22351	0.24154028155096285	No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18483	0.19974001270218095	No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16663	0.18007184069991028	No Hit
CCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12253	0.1324143470021005	No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10176	0.10996885620610257	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	13395	54.13686	48
TCGTATG	13390	54.129192	45
CGTATGC	13560	53.456364	46
CTCGTAT	13555	53.360912	44
GTATGCC	13970	51.92973	47
GCCGTCT	14275	50.716866	51
TCTCGTA	14380	50.36107	43
ATGCCGT	14685	49.461586	49
ATCTCGT	14680	49.211315	42
ACGTCTG	14840	49.07856	15
CGTCTGA	14855	49.029003	16
ACACGTC	15180	47.9793	13
TGCCGTC	15325	47.41523	50
CACGTCT	15405	47.39343	14
GTCAAAT	15365	47.170982	37
CACACGT	15880	45.882927	12
AATCTCG	15745	45.751495	41
AAATCTC	16065	44.9687	40
CAGTCAC	16215	44.917767	27
GAGTCAA	16155	44.864258	35