FastQCFastQC Report
Wed 8 May 2024
EGAF00005740456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14324197
Total Bases931 Mbp
Sequences flagged as poor quality0
Sequence length65
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA866720.6050740575545003No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACCACAATCTCGTAT413670.2887910575371171TruSeq Adapter, Index 23 (97% over 37bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT210980.14728923373505684No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT156860.10950701110854591No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT149180.10414545401742242No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)