EGAF00005740457 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005740457
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12398837
Sequences flagged as poor quality	0
Sequence length	65
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	60459	0.48761831452417675	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAAGACTAATCTCGTATGCCGTCTTCTGCTTG	43974	0.3546622961492275	TruSeq Adapter, Index 2 (97% over 36bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	5355	49.97042	48
TCGTATG	5390	49.638535	45
CGTATGC	5525	48.37947	46
CTCGTAT	5715	46.815693	44
GACTAAT	6245	42.98425	37
GTATGCC	6250	42.81466	47
ACTAATC	6275	42.73174	38
CTAATCT	6705	40.035294	39
TCTCGTA	6905	38.96113	43
AGACTAA	6920	38.876675	36
GCCGTCT	6885	38.823032	51
CGTCTGA	7215	37.818935	16
ACGTCTG	7225	37.766594	15
ATCTCGT	7215	37.28713	42
ATGCCGT	7270	36.888813	49
AAGACTA	7310	36.883255	35
ACACGTC	7540	36.267056	13
CACGTCT	7955	34.41214	14
TAATCTC	7930	33.850773	40
AATCTCG	7915	33.80312	41