FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005740460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16942332
Sequences flagged as poor quality0
Sequence length65
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAATGGAAATCTCGTATGCCGTCTTCTGCTTG532900.3145375736941054TruSeq Adapter, Index 2 (97% over 38bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA370000.2183878819043329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)