EGAF00005740461 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005740461
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9833834
Sequences flagged as poor quality	0
Sequence length	65
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	234589	2.3855293876223658	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCACTTCGAATCTCGTATGCCGTCTTCTGCTTG	23720	0.2412080578134632	TruSeq Adapter, Index 7 (97% over 35bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14502	0.14747045760585342	No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10938	0.11122823509121672	No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10236	0.10408961550500039	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	3065	49.667965	48
TCGTATG	3100	49.19586	45
CTCGTAT	3240	46.796978	44
TCGAATC	3245	46.45216	38
CGTATGC	3315	45.833267	46
ACTTCGA	3715	40.972324	35
GTATGCC	3835	39.849377	47
CGAATCT	3985	38.19628	39
TCTCGTA	4075	37.49746	43
ATGCCGT	4115	37.066177	49
GCCGTCT	4175	36.392162	51
CACTTCG	4445	34.309826	34
ATCTCGT	4500	34.218243	42
ACGTCTG	4630	33.32186	15
CGTCTGA	4700	32.825577	16
TGCCGTC	4955	30.961132	50
ACACGTC	4960	30.86667	13
CACGTCT	5195	29.697525	14
AATCTCG	5425	28.057545	41
CACACGT	5580	27.648504	12