EGAF00005740462 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005740462
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9849368
Sequences flagged as poor quality	0
Sequence length	65
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	235919	2.3952704376565075	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCACTTCGAATCTCGTATGCCGTCTTCTGCTTG	23863	0.24227950463420597	TruSeq Adapter, Index 7 (97% over 35bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14729	0.1495425899407962	No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11128	0.11298186848130763	No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10529	0.10690025999637742	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	2980	50.69019	48
TCGTATG	3095	48.609642	45
CGTATGC	3310	45.902256	46
TCGAATC	3275	45.66612	38
CTCGTAT	3295	45.569603	44
ACTTCGA	3620	41.31396	35
GTATGCC	3865	39.38779	47
TCTCGTA	3995	37.953568	43
ATGCCGT	4065	37.45103	49
CGAATCT	4075	37.062935	39
CACTTCG	4225	35.886726	34
GCCGTCT	4240	35.62786	51
ATCTCGT	4555	33.093037	42
ACGTCTG	4710	32.441902	15
CGTCTGA	4705	32.350986	16
TGCCGTC	4755	32.265503	50
ACACGTC	5010	30.322638	13
AATCTCG	5435	27.897226	41
CACGTCT	5500	27.889332	14
TTCGAAT	5575	27.302492	37