FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005740470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10866766
Sequences flagged as poor quality0
Sequence length65
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3381013.11133045470934No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGAAGTAATCTCGTATGCCGTCTTCTGCTTG497500.45781790092839025TruSeq Adapter, Index 7 (97% over 37bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT204060.18778355952451725No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT151840.13972878407430508No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT144580.13304786355020434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)