FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005740471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10879173
Sequences flagged as poor quality0
Sequence length65
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3410993.135339423318298No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGAAGTAATCTCGTATGCCGTCTTCTGCTTG502800.46216748276730224TruSeq Adapter, Index 7 (97% over 37bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT203980.18749586940110247No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT153090.1407184167399489No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT146490.13465177913799148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)