FastQCFastQC Report
Fri 10 May 2024
EGAF00005740472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16249075
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length65
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1347920.8295364505364151No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTGAGAATCTCGTAT461220.28384384957297565TruSeq Adapter, Index 16 (97% over 37bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT226320.13928177450101006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)