FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005740548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14960871
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTATG488660.32662536826899985TruSeq Adapter, Index 13 (97% over 40bp)
CGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAG206790.13822056215844652No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC154640.10336296596635317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)