FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005740633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences161864906
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGTTTTTAAACTATTCGACACTAATTGATGGCCATCCGAATTCTTTTG4496070.2777668187074473No Hit
GTACTTTTTTGGACAGTATGGATAGCAAATAGTAGCACTGCCACAACTAA3933610.24301808818274667No Hit
CTTTTTTGGACAGTATGGATAGCAAATAGTAGCACTGCCACAACTAACTC3704010.22883341988905243No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG3253030.20097191419615068No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG3022800.18674832455652865No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG2731240.1687357727807904No Hit
GCTAAATTCACTATTTTTGCCGTCTGAGCTCTTCAATGGTGGAACAGATC2712620.16758543077892374No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA2633090.1626720742048928No Hit
GGCATTTTTTCATGAAGGACAAGCTAAATTCACTATTTTTGCCGTCTGAG2558210.1580459942317577No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA2384510.14731482314023028No Hit
GTTTTTTGAACAGACTACTTGTCAATGCTGAATGGCAACTCAGCACCGTC2321920.1434480183122585No Hit
GGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAAC2229080.13771237108060966No Hit
AGCAAATAGTAGCACTGCCACAACTAACTCAATGCATGTGTAAGGAAGGA1907340.11783530149518635No Hit
CATTAATCAGGCACTCCTCAATTGCTTCATATAGCCCCCCAAGATCAAAG1834100.1133105405812919No Hit
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG1823040.11262725473055908No Hit
GGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTT1722180.10639613258725768No Hit
GGACAAGCTAAATTCACTATTTTTGCCGTCTGAGCTCTTCAATGGTGGAA1706670.10543792611846325No Hit
CGGGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAA1699810.10501411590724923No Hit
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGAT1646940.10174781184502094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)