FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005740634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences161864906
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTGATCCAAAATGGAAGATTTTGTGCGACAATGCTTCAATCCGATGAT4457000.27535307746078075No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT3901540.24103680633527813No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA3824430.23627295715354135No Hit
GTCGCAGTCTCGCACCCGCGAGATACTCACAAAAACCACCGTGGACCATA3644210.22513898102161808No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG2733490.1688747775876755No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT2537150.15674490923931342No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG2493080.15402226842179118No Hit
GCTTCTTATCGTTCAGGCTCTTAGGGACAACCTGGAACCTGGGACCTTTG2492340.15397655128530455No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA2433140.15031918036637293No Hit
GGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAG2310000.14271160173533848No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT2291870.14159153189141568No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT2269950.14023731617278423No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA2226840.13757398407286628No Hit
GCAGGTACTGATCCAAAATGGAAGATTTTGTGCGACAATGCTTCAATCCG2137450.13205147754510788No Hit
CTTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATG2096610.12952838585035845No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2001460.12365002701697426No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT1958340.12098607711791462No Hit
GGGGAGGACCTGAAAATCGAAACAAACAAATTTGCAGCAATATGCACTCA1909910.11799407587460621No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC1901720.11748809837754454No Hit
CAGGTACTGATCCAAAATGGAAGATTTTGTGCGACAATGCTTCAATCCGA1857510.11475680837203836No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG1833300.113261116649955No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA1785230.1102913561757482No Hit
GGGGTTTAAAATGAATCCAAATCAGAAAATAATAACCATTGGATCAATCT1784750.11026170181694604No Hit
GGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATGATCCCTGGGTT1707560.10549291024207558No Hit
GTCGGGATATCCAGTATGGTGGAGGCTATGGTTTCCAGAGCCCGAATTGA1701720.1051321155433161No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG1677200.10361727204783969No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)