FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005740659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142364795
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA2218180.15580958761609567No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC1905090.13381749329249554No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)