FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005740946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140507135
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9838570.7002185333862228No Hit
GTCGCAGTCTCGCACCCGCGAGATACTCACAAAAACCACCGTGGACCATA3298300.23474252748801688No Hit
TACTGATCCAAAATGGAAGATTTTGTGCGACAATGCTTCAATCCGATGAT3086780.21968848770562432No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG2900900.20645926628565875No Hit
GCTTCTTATCGTTCAGGCTCTTAGGGACAACCTGGAACCTGGGACCTTTG2619810.18645387652377937No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG2439030.17358762599493613No Hit
GGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAG2420160.1722446336977834No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA2396760.17057923784439843No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA2319940.16511189983341415No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT2301250.16378171827359517No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT2191530.1559728621610568No Hit
GGGGAGGACCTGAAAATCGAAACAAACAAATTTGCAGCAATATGCACTCA1910120.1359446977550286No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA1873780.13335835222887435No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1767960.12582706209190017No Hit
CTTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATG1757950.12511464275461884No Hit
GCTGAATCAAGAAAACTGCTTCTTATCGTTCAGGCTCTTAGGGACAACCT1672290.11901815519902245No Hit
GCAGGTACTGATCCAAAATGGAAGATTTTGTGCGACAATGCTTCAATCCG1658500.11803671037773278No Hit
GGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATGATCCCTGGGTT1599180.11381486071863896No Hit
GTCGGGATATCCAGTATGGTGGAGGCTATGGTTTCCAGAGCCCGAATTGA1568160.11160714365145942No Hit
CAGGTACTGATCCAAAATGGAAGATTTTGTGCGACAATGCTTCAATCCGA1521140.10826069437683716No Hit
GGAAAAAACAATGAAAGAGTATGGGGAGGACCTGAAAATCGAAACAAACA1441640.10260261872110622No Hit
GGCGAGTCAATAATCGTAGAACTTGGTGATCCAAATGCACTTTTGAAGCA1425630.10146317480603387No Hit
GTCTGCAGGACTTTATTAGCAAAGTCGGTATTCAACAGCTTGTATGCATC1405570.10003548930095259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)