FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005740987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145267439
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGTTTTTAAACTATTCGACACTAATTGATGGCCATCCGAATTCTTTTG5055900.3480408297140834No Hit
GTACTTTTTTGGACAGTATGGATAGCAAATAGTAGCACTGCCACAACTAA3915200.26951669465309425No Hit
GCTAAATTCACTATTTTTGCCGTCTGAGCTCTTCAATGGTGGAACAGATC3623040.24940482360950827No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA2973470.20468936607328778No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG2783710.1916265626462927No Hit
AGCAAATAGTAGCACTGCCACAACTAACTCAATGCATGTGTAAGGAAGGA2774090.1909643357862184No Hit
GGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAAC2551030.1756092086128124No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA2399610.16518567522898234No Hit
GGCATTTTTTCATGAAGGACAAGCTAAATTCACTATTTTTGCCGTCTGAG2296630.1580966812528443No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG2275100.15661458725103566No Hit
GTTTTTTGAACAGACTACTTGTCAATGCTGAATGGCAACTCAGCACCGTC2217450.1526460447891561No Hit
CATTAATCAGGCACTCCTCAATTGCTTCATATAGCCCCCCAAGATCAAAG2187250.15056712055066931No Hit
GTTGAACCAAGAAGCATTAAGCAAAACCCAGGGATCATTAATCAGGCACT2156880.14847649375852218No Hit
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGAT2108840.14516948977120742No Hit
GGACAAGCTAAATTCACTATTTTTGCCGTCTGAGCTCTTCAATGGTGGAA2091560.1439799596109077No Hit
CTTTTTTGGACAGTATGGATAGCAAATAGTAGCACTGCCACAACTAACTC2083530.14342718604683324No Hit
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG1954160.1345215427113023No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG1899210.13073886433696955No Hit
AATCAATCCGTGCATCAATTCGGGCTCTGGAAACCATAGCCTCCACCATA1893070.13031619563417787No Hit
GGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTT1777630.12236947331328667No Hit
GGATAGCAAATAGTAGCACTGCCACAACTAACTCAATGCATGTGTAAGGA1772450.12201288961940053No Hit
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGAT1643740.11315267972749213No Hit
GCATTTTTTCATGAAGGACAAGCTAAATTCACTATTTTTGCCGTCTGAGC1543690.10626538270561788No Hit
GGAAGGAGTTGAACCAAGAAGCATTAAGCAAAACCCAGGGATCATTAATC1541090.10608640247316536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)