FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005740988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005740988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145267439
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9679020.6662897113509381No Hit
GTCGCAGTCTCGCACCCGCGAGATACTCACAAAAACCACCGTGGACCATA4689900.32284592006884627No Hit
TACTGATCCAAAATGGAAGATTTTGTGCGACAATGCTTCAATCCGATGAT3799760.2615699723322031No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG3037910.20912532229607214No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG3003580.20676209484218966No Hit
GCTTCTTATCGTTCAGGCTCTTAGGGACAACCTGGAACCTGGGACCTTTG2972430.20461777398030676No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA2836390.1952529775099842No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT2699520.18583104504237868No Hit
GGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAG2614840.1800017965485025No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA2532930.1743632308407392No Hit
GGGGAGGACCTGAAAATCGAAACAAACAAATTTGCAGCAATATGCACTCA2385900.16424189869555006No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA2367630.16298421836981652No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT2327280.1602065828392555No Hit
CTTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATG2111340.1453415861485656No Hit
GGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATGATCCCTGGGTT2085180.14354076965588963No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT2055980.14153068396834612No Hit
GTCGGGATATCCAGTATGGTGGAGGCTATGGTTTCCAGAGCCCGAATTGA1951440.1343343018527366No Hit
GCAGGTACTGATCCAAAATGGAAGATTTTGTGCGACAATGCTTCAATCCG1894230.13039604835327206No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT1811980.12473407753818802No Hit
GCTGAATCAAGAAAACTGCTTCTTATCGTTCAGGCTCTTAGGGACAACCT1797460.12373454177849173No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT1775620.1222311078258907No Hit
CAGGTACTGATCCAAAATGGAAGATTTTGTGCGACAATGCTTCAATCCGA1714370.11801474658061535No Hit
GGCGAGTCAATAATCGTAGAACTTGGTGATCCAAATGCACTTTTGAAGCA1710580.11775384847254036No Hit
GGGAGGACCTGAAAATCGAAACAAACAAATTTGCAGCAATATGCACTCAC1689120.11627657316929778No Hit
GTCTGCAGGACTTTATTAGCAAAGTCGGTATTCAACAGCTTGTATGCATC1588190.10932869822259345No Hit
GGGCAAAGAAGACAAGAGATATGGGCCAGCACTAAGCATCAATGAACTGA1584240.10905678594636752No Hit
GTCGGTATTCAACAGCTTGTATGCATCTCCACAACTAGAAGGATTTTCAG1555150.10705427249942776No Hit
GTGCGACAATGCTTCAATCCGATGATTGTCGAGCTTGCGGAAAAAACAAT1554370.10700057842969202No Hit
GTCGAGCTTGCGGAAAAAACAATGAAAGAGTATGGGGAGGACCTGAAAAT1520300.10465524899905478No Hit
GGGGTTTAAAATGAATCCAAATCAGAAAATAATAACCATTGGATCAATCT1520040.10463735097580953No Hit
GGAAAAAACAATGAAAGAGTATGGGGAGGACCTGAAAATCGAAACAAACA1507890.10380096258184879No Hit
GCCTGATTAATGATCCCTGGGTTTTGCTTAATGCTTCTTGGTTCAACTCC1507250.10375690590924509No Hit
GCCAGCACTAAGCATCAATGAACTGAGCAACCTTGCGAAAGGAGAGAAGG1496220.1029976166923408No Hit
GCGGAAAAAACAATGAAAGAGTATGGGGAGGACCTGAAAATCGAAACAAA1471540.10129868125506089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)