FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005741297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005741297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125807809
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA1974060.1569107685517359No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC1836130.1459472201761339No Hit
GGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAAC1379150.10962356080773969No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)