FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005741314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005741314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145936654
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15303471.0486378562578254No Hit
GTCGCAGTCTCGCACCCGCGAGATACTCACAAAAACCACCGTGGACCATA4551590.3118880606924152No Hit
TACTGATCCAAAATGGAAGATTTTGTGCGACAATGCTTCAATCCGATGAT3084670.21137047585043303No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG3047030.20879127460329466No Hit
GGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAG2794570.19149198802379008No Hit
GCTTCTTATCGTTCAGGCTCTTAGGGACAACCTGGAACCTGGGACCTTTG2629290.1801665262244535No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA2601400.17825542306869666No Hit
GTCGGGATATCCAGTATGGTGGAGGCTATGGTTTCCAGAGCCCGAATTGA2506300.1717388970696834No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG2453620.16812911168978836No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT2377770.16293165115324626No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT2263990.15513511773402724No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA2147700.14716659188307826No Hit
AGGCAAACCATTTGAATGGATGTCAATCCGACCTTACTTTTCTTAAAAGT2070870.14190197892299217No Hit
GGGGAGGACCTGAAAATCGAAACAAACAAATTTGCAGCAATATGCACTCA1905080.13054157045426026No Hit
CTTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATG1885760.1292177083901074No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA1831400.12549280456985124No Hit
GCTGAATCAAGAAAACTGCTTCTTATCGTTCAGGCTCTTAGGGACAACCT1785150.12232362131586215No Hit
GGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATGATCCCTGGGTT1714940.11751262982910379No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1682840.11531304534363246No Hit
GGGATATCCAGTATGGTGGAGGCTATGGTTTCCAGAGCCCGAATTGATGC1630660.11173752140432108No Hit
GCAGGTACTGATCCAAAATGGAAGATTTTGTGCGACAATGCTTCAATCCG1611020.1103917320181947No Hit
GGAAAAAACAATGAAAGAGTATGGGGAGGACCTGAAAATCGAAACAAACA1605270.10999772545148252No Hit
GGGAAAATAAAAACAACCAAAATGAAGGCAAACCTACTGGTCCTGTTATG1565670.1072842193572562No Hit
GTTTAAAATGAATCCAAATCAGAAAATAATAACCATTGGATCAATCTGTC1553310.10643727654602798No Hit
GGAAAATAAAAACAACCAAAATGAAGGCAAACCTACTGGTCCTGTTATGT1535890.10524360795609307No Hit
GGCAAACCATTTGAATGGATGTCAATCCGACCTTACTTTTCTTAAAAGTG1524220.10444394593287029No Hit
GGGGTTTAAAATGAATCCAAATCAGAAAATAATAACCATTGGATCAATCT1508730.10338252650358834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)